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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44784007_44785072_F

Intron Information:

Intron Rank:
24961
Intron Class:
major
Intron Phase:
Intron Coordinates:
44784007 - 44785072
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTCA
5'SS Class:
major
3'SS Sequence:
TGATCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAA
U12 Branch Point Sequence:
ACTTGCTTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.6
39.2
Major BPS
63.3
0.33
1.2
55.1
42.1
Major PPT
79.7
0.67
0.9
73.6
36.7
Minor 5ss
42.7
-0.8
3.1
56.5
47.9
Minor BPS
59.2
0.27
1.8
67.35
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412