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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44785165_44785495_F

Intron Information:

Intron Rank:
24962
Intron Class:
major
Intron Phase:
Intron Coordinates:
44785165 - 44785495
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TGACCTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TGTTTCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
78.6
0.64
0.9
72.1
37.7
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
61.8
0.45
1.8
81.31
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412