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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44786045_44786177_F

Intron Information:

Intron Rank:
24964
Intron Class:
major
Intron Phase:
Intron Coordinates:
44786045 - 44786177
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTAG
5'SS Class:
major
3'SS Sequence:
CCTATCTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GCTTCCCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
59.9
41.6
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
73.9
0.54
1
67.8
37.6
Minor 5ss
34
-1.8
3.6
45.4
49.7
Minor BPS
57.8
0.32
2
77.58
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412