About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44786291_44786702_F

Intron Information:

Intron Rank:
24965
Intron Class:
major
Intron Phase:
Intron Coordinates:
44786291 - 44786702
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TCATCCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GAATTCTAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.4
0.62
0.8
69.7
36.4
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
51.2
-0.1
1.7
53.68
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412