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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44786873_44787213_F

Intron Information:

Intron Rank:
24966
Intron Class:
major
Intron Phase:
Intron Coordinates:
44786873 - 44787213
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTGGA
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TGCTCCTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.1
58.7
40.6
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
83.5
0.75
0.9
85.6
26.4
Minor 5ss
39.4
-1.2
3.1
44.6
44.5
Minor BPS
74.7
0.75
1.4
76.66
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412