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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44787257_44788016_F

Intron Information:

Intron Rank:
24967
Intron Class:
major
Intron Phase:
Intron Coordinates:
44787257 - 44788016
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
TACAACTTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTCTTTACAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
60.8
0.24
1
55
39.5
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
67.9
0.56
1.7
80.33
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412