Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44788191_44789002_F

Intron Information:

Intron Rank:

24968

Intron Class:

major

Intron Phase:

Intron Coordinates:

44788191 - 44789002

Intron Length:

812

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTATAT

U12 Branch Point Sequence:

TTTTTCCTACAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

80.8

34.4

Major BPS

61.5

0.29

1.3

45.5

Major PPT

93.2

0.97

0.6

88.6

21.1

Minor 5ss

44.3

-0.6

2.9

62.8

41.9

Minor BPS

-0.2

2.1

64.91

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005052

44747627 - 44794038

46412