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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44797656_44799084_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44797656 - 44799084
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGCATG
5'SS Class:
major
3'SS Sequence:
CCTGTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
AAAGCATTAACT
Flanking Amino Acid:
ETFGKKLYHHEVVAHWIAEC
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.3
72.7
44.5
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
75.6
0.58
0.8
72.7
32.1
Minor 5ss
44.4
-0.6
2.8
57
40.8
Minor BPS
60.8
0.42
1.7
74.2
41.8

Associated Gene:

Gene:
ACAD11
Ensembl Gene ID:
ENSAPLG00000004264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004429
44796387 - 44823875
27489