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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44800217_44800417_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44800217 - 44800417
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
TCTGTACCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTCTGTACCT
Flanking Amino Acid:
IRPLSVFGYLDEIHGGHFEI
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.3
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.4
0.62
0.9
70.5
35.2
Minor 5ss
32.5
-2
3.5
39.8
46.2
Minor BPS
53.2
0.18
2.3
78.9
44

Associated Gene:

Gene:
ACAD11
Ensembl Gene ID:
ENSAPLG00000004264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004429
44796387 - 44823875
27489