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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44800504_44802374_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44800504 - 44802374
Intron Length:
1871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTGATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TCAAAGTTAATT
Flanking Amino Acid:
MGKTKNSSASRYKQHSMILV
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
66.6
0.37
1.1
66
44.2
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
47.5
-0.1
2.2
66.41
44.2

Associated Gene:

Gene:
ACAD11
Ensembl Gene ID:
ENSAPLG00000004264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004429
44796387 - 44823875
27489