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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44806159_44809531_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
44806159 - 44809531
Intron Length:
3373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGGAAATT
5'SS Class:
weak_major
3'SS Sequence:
AACTCCGTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
AGGATCTCAACT
Flanking Amino Acid:
AQETNLSSRDYYNMYELLCE
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.6
0.04
1.1
59.6
38.8
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
60.9
0.25
0.9
53.8
35.7
Minor 5ss
34.5
-1.8
3.6
53.8
44.7
Minor BPS
54.9
0.23
1.6
68.15
42.3

Associated Gene:

Gene:
ACKR4
Ensembl Gene ID:
ENSAPLG00000001907
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001901
44806119 - 44811579
5461