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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44814184_44814294_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44814184 - 44814294
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGCAAA
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TGTTTCTTACAG
Flanking Amino Acid:
APEVFNCHAPDTGNMEVLHM
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
68
38.5
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
89.2
0.88
0.7
84.2
30.9
Minor 5ss
35.2
-1.7
2.7
38.4
40.7
Minor BPS
57.3
0.09
1.8
64.96
42.7

Associated Gene:

Gene:
ACAD11
Ensembl Gene ID:
ENSAPLG00000004264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004429
44796387 - 44823875
27489