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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44814434_44814815_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44814434 - 44814815
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ATTCTCTGAACA
Flanking Amino Acid:
KKPPVLERLKEMAKAEGLWN
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
70.2
0.45
1
66.2
39
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
67.8
0.55
1.4
76.27
33.9

Associated Gene:

Gene:
ACAD11
Ensembl Gene ID:
ENSAPLG00000004264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004429
44796387 - 44823875
27489