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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44817058_44817198_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44817058 - 44817198
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
GGATGTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTATATTGGATG
Flanking Amino Acid:
LAEKGLELSKRLSFSSSTRD
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
66.6
0.37
1
62.7
44
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
47.9
-0.3
1.7
56.58
39.1

Associated Gene:

Gene:
ACAD11
Ensembl Gene ID:
ENSAPLG00000004264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004429
44796387 - 44823875
27489