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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44821904_44822159_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44821904 - 44822159
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GTTCACTGAAAC
Flanking Amino Acid:
HGPLLPRAHKVDREYHVQKA
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
80.3
0.68
0.9
77.5
36.9
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
50.3
-0
1.8
64.84
39.3

Associated Gene:

Gene:
ACAD11
Ensembl Gene ID:
ENSAPLG00000004264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004429
44796387 - 44823875
27489