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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44822260_44823738_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44822260 - 44823738
Intron Length:
1479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTGTAAGTAATT
Flanking Amino Acid:
PEGALEVRQYSSGQSNPTFY
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
84.5
0.78
0.8
80.7
31.3
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
47.6
-0.1
2.3
73.95
43

Associated Gene:

Gene:
ACAD11
Ensembl Gene ID:
ENSAPLG00000004264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004429
44796387 - 44823875
27489