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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44825060_44825169_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44825060 - 44825169
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CGTACCTTATTT
Flanking Amino Acid:
KRMGIVQDYEKIRTFTVAVV
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
88
0.85
0.6
84.5
23.2
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
60
0.39
1.7
73.37
43.7

Associated Gene:

Gene:
UBA5
Ensembl Gene ID:
ENSAPLG00000004094
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004256
44824357 - 44842663
18307