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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44827058_44838029_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44827058 - 44838029
Intron Length:
10972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATT
5'SS Class:
strong_major
3'SS Sequence:
ATACCTATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATGCAAAC
Flanking Amino Acid:
DNFEHFMDRISNGALEEGKP
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
86.5
28.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.7
0.53
0.9
66.9
38.3
Minor 5ss
39.5
-1.2
3.1
58.2
46
Minor BPS
41.5
-0.6
2.2
58.5
40

Associated Gene:

Gene:
UBA5
Ensembl Gene ID:
ENSAPLG00000004094
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004256
44824357 - 44842663
18307