Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44838115_44838962_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44838115 - 44838962

Intron Length:

848

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGACCA

5'SS Class:

strong_major

3'SS Sequence:

TTGTGTTTATAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTGAT

U12 Branch Point Sequence:

TTGTGTTTATAA

Flanking Amino Acid:

NFEARMAINTACNELGQIWM

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

65.6

40.2

Major BPS

70.8

0.52

1.2

63.4

44.3

Major PPT

66.9

0.38

1.2

72.7

41.5

Minor 5ss

32.7

-2

3.1

41.7

44.2

Minor BPS

48.2

-0.1

2.1

63.93

42.8

Associated Gene:

Gene:

UBA5

Ensembl Gene ID:

ENSAPLG00000004094

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004256

44824357 - 44842663

18307