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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44839068_44839154_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44839068 - 44839154
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
GATTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTGTTTAAAC
Flanking Amino Acid:
IIPGESACFACAPPLVVAAN
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
68.1
37
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.7
0.71
0.8
78
36.1
Minor 5ss
39.5
-1.2
3.1
50.4
46
Minor BPS
66.3
0.49
1.8
79.33
36

Associated Gene:

Gene:
UBA5
Ensembl Gene ID:
ENSAPLG00000004094
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004256
44824357 - 44842663
18307