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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44840640_44841351_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44840640 - 44841351
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
GCTACATATACT
Flanking Amino Acid:
NCRKQQEIYKKKVAAQPKQE
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
66.4
0.41
1
61.3
37
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
44.1
-0.3
2.2
62.93
46.4

Associated Gene:

Gene:
UBA5
Ensembl Gene ID:
ENSAPLG00000004094
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004256
44824357 - 44842663
18307