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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44859460_44860583_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44859460 - 44860583
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTACCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTCTTTTACC
Flanking Amino Acid:
IIIDSIDQIQVVAHSSS*
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.3
0.46
1
71.7
31.8
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
70.4
0.62
1.6
78.35
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003739
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003855
44859436 - 44872402
12967