About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44864331_44864892_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44864331 - 44864892
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTACCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TATCACTTACCT
Flanking Amino Acid:
EQISCVNKAKMIDHVGGVEE
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
75.8
36.3
Major BPS
78.3
0.7
1
80
32.1
Major PPT
83.8
0.76
0.8
80.7
31.1
Minor 5ss
37.3
-1.4
3.6
55.1
49.1
Minor BPS
60.7
0.41
1.8
80.12
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003739
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003855
44859436 - 44872402
12967