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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44865041_44866867_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44865041 - 44866867
Intron Length:
1827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCAATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TGATTTCCAATC
Flanking Amino Acid:
VVLLLHLTLPSCLLEDCEEA
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
69.1
0.43
0.9
60.9
39.8
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
46.2
-0.3
1.8
56.51
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003739
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003855
44859436 - 44872402
12967