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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44867029_44867258_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44867029 - 44867258
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
AATTTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GATTTAGTAATA
Flanking Amino Acid:
TQPEVEIFIRNYSPKLQRTC
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.6
36.4
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
78.5
0.64
0.9
74.3
40.5
Minor 5ss
32.8
-2
2.6
34.8
34.3
Minor BPS
47.3
-0.2
2.2
62.02
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003739
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003855
44859436 - 44872402
12967