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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44867393_44868675_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44867393 - 44868675
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
VEGPFANINRDDWDAAVASL
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.6
0.76
0.9
81.4
35.2
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003739
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003855
44859436 - 44872402
12967