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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45104984_45110492_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45104984 - 45110492
Intron Length:
5509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
GCCTGCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATCTTTGAAG
Flanking Amino Acid:
RESWEAIYHQVSYLSQELTR
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
80
0.75
1
78.6
31
Major PPT
70.2
0.46
0.9
60.6
40.3
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
59.4
0.15
1.5
61.23
40.5

Associated Gene:

Gene:
BFSP2
Ensembl Gene ID:
ENSAPLG00000001210
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048446
45104537 - 45118930
14394