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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45104984_45111024_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45104984 - 45111024
Intron Length:
6041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ATTGCTTGAGCT
Flanking Amino Acid:
RESWEAIYHQVGEAVLENAR
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
82.6
0.73
0.7
76.6
25.4
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
53.9
0.2
1.8
75.16
41.7

Associated Gene:

Gene:
BFSP2
Ensembl Gene ID:
ENSAPLG00000001210
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001349
45104537 - 45118930
14394