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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45142010_45142389_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45142010 - 45142389
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTATTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
CCTTCCTTTATT
Flanking Amino Acid:
PEYIADYLIQEPPPPMESYC
Intron Amino Acid Position:
1423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
72.4
39.2
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
73.9
0.54
1
75.4
31.9
Minor 5ss
29.8
-2.3
3.4
39.7
46.3
Minor BPS
68.6
0.67
1.6
79.54
43

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391