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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45146861_45147179_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45146861 - 45147179
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATAGGTA
5'SS Class:
major
3'SS Sequence:
ATCTGGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTATTTTTATTT
Flanking Amino Acid:
RESIGDSEIAGNKSDLMEGV
Intron Amino Acid Position:
1151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.1
60.8
37.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.3
0.57
1
65.3
45
Minor 5ss
38.4
-1.3
3.7
51.6
47.5
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391