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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45148430_45149003_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45148430 - 45149003
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTTTGTTTATTC
Flanking Amino Acid:
EENEVYESKGVLTQALEMRE
Intron Amino Acid Position:
1013

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.3
0.57
1
76.1
32.5
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
50.3
-0
2
65.17
41.7

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391