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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45149018_45149611_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
45149018 - 45149611
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGTGTGAT
5'SS Class:
major
3'SS Sequence:
AAACCGTAACAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
CAAACCGTAACA
Flanking Amino Acid:
TGKPAEENEVYESKGVLTQA
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1
65.6
33.4
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
45.7
-0.2
1.1
35.8
38.6
Minor 5ss
36.9
-1.5
3.3
49.7
42.3
Minor BPS
51
0.03
2.1
62.29
43.4

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391