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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45149767_45150140_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45149767 - 45150140
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GATGTTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATATGTTAACT
Flanking Amino Acid:
HIVSEHWLLESAQEYKRLPE
Intron Amino Acid Position:
957

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.6
0.51
1
64.7
45.5
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
54.3
0.21
2.1
73.25
43.6

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391