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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45150265_45151346_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45150265 - 45151346
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAGCT
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATATCCTCAAGT
Flanking Amino Acid:
AVAASLGAEYRWSFDESVTH
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
65.2
39.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.1
0.86
0.6
81.5
30.4
Minor 5ss
44.7
-0.6
3.2
66
45.1
Minor BPS
62.9
0.48
1.9
79.93
41.6

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391