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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45151457_45152155_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45151457 - 45152155
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGAAAT
5'SS Class:
major
3'SS Sequence:
CCTTCTTGACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCCTTCTTGACC
Flanking Amino Acid:
PQLKAAQPEAEEEPKPLADV
Intron Amino Acid Position:
879

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
72
39.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.2
0.48
1
65.6
39.8
Minor 5ss
34.2
-1.8
3.3
49.3
46.7
Minor BPS
71.7
0.67
1.2
72.77
39.1

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391