Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45152330_45153525_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45152330 - 45153525

Intron Length:

1196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGTTC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTTTGGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

TGTTCATGAAAG

Flanking Amino Acid:

KLFKPSFDVKDALAALETPG

Intron Amino Acid Position:

821

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

75.8

34.6

Major BPS

84.8

0.86

85.7

34.9

Major PPT

81.3

0.71

0.9

80.6

31.4

Minor 5ss

41.4

-1

3.3

58.9

45.9

Minor BPS

52.7

-0

1.9

64.38

42.4

Associated Gene:

Gene:

TOPBP1

Ensembl Gene ID:

ENSAPLG00000010008

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010443

45141866 - 45162256

20391