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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45153790_45153950_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
45153790 - 45153950
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTA|GCAAACTAA
5'SS Class:
weak_major
3'SS Sequence:
ACTTAATGACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CGTTACTCAACT
Flanking Amino Acid:
ENAEAEGWLLTPATIKSPDS
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.07
1.3
50.9
36.6
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
49.5
-0
1.2
46.9
43.4
Minor 5ss
34
-1.8
4.1
47.3
44.1
Minor BPS
61.8
0.45
1.8
78.41
43.2

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391