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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45156293_45156550_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45156293 - 45156550
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
TGTCAAACAACT
Flanking Amino Acid:
SQYLNNDSTLVEAEKLPSGG
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
33.4
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
43
-0.4
2.1
66.84
42.4

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391