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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45156799_45157313_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45156799 - 45157313
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTGATA
5'SS Class:
major
3'SS Sequence:
CTTTATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
ATTTGTATAACG
Flanking Amino Acid:
LKHFLDKTLHRPHVVTAKWL
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.3
63.8
41.8
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
84.8
0.78
0.7
80.1
31.6
Minor 5ss
31.2
-2.1
3.2
40.9
45
Minor BPS
52.7
-0
2.1
66.51
41.4

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391