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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45159945_45160069_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45159945 - 45160069
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTGCTTGATTT
Flanking Amino Acid:
VKTLWDKSQQSMMRYTDVNM
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.4
0.59
0.8
74.2
30.9
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
48.7
-0
1.8
67.89
43.9

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391