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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45161174_45161733_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45161174 - 45161733
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTGTTATT
Flanking Amino Acid:
RGDVFNHLKKLGCRIVGPQV
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
35.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.2
0.77
0.8
78.5
34.2
Minor 5ss
50.9
0.03
2.4
66.9
44.7
Minor BPS
55.4
0.25
2.3
83.31
38.3

Associated Gene:

Gene:
TOPBP1
Ensembl Gene ID:
ENSAPLG00000010008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010443
45141866 - 45162256
20391