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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45252508_45256069_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
45252508 - 45256069
Intron Length:
3562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTGGCCGT
5'SS Class:
weak_major
3'SS Sequence:
TCTCTAGCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGCTCATGAATT
Flanking Amino Acid:
GWPCVFGGVWLIILVFCFKD
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.9
0.14
1.3
46.6
48.8
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
64.9
0.33
0.9
63.8
37
Minor 5ss
34.1
-1.8
3.2
40.3
45.5
Minor BPS
58.1
0.33
1.8
75.06
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010233
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010676
45252373 - 45274452
22080