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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45256205_45257335_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45256205 - 45257335
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGATTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
FSYKLEYLLQFDQKEKSTLL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
70.3
0.46
1.1
75.6
37.6
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010233
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010676
45252373 - 45274452
22080