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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45257462_45260352_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45257462 - 45260352
Intron Length:
2891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CAATATTTAATT
Flanking Amino Acid:
GIRFVKSITELRTSLGKGRA
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.1
0.77
0.8
76.4
37.7
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
60.9
0.42
1.5
70.78
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010233
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010676
45252373 - 45274452
22080