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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45260460_45261323_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45260460 - 45261323
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACAGC
5'SS Class:
major
3'SS Sequence:
TGTTGTTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATGAATA
Flanking Amino Acid:
QQCFMNTKVTSDWYYARSPF
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
65.5
40.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.7
0.53
1.1
71.5
43.2
Minor 5ss
33.6
-1.9
3
43
44.2
Minor BPS
51.3
0.04
1.9
68.31
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010233
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010676
45252373 - 45274452
22080