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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45263855_45263899_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
45263855 - 45263899
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
CGATCACAGGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
GAAACCCGATCA
Flanking Amino Acid:
KEKEKLEEEYKQLELQESRL
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
54.9
42.8
Major BPS
62
0.3
1
53
34.1
Major PPT
53.4
0.08
1.1
47.9
39.5
Minor 5ss
32
-2.1
3.4
44
44.4
Minor BPS
41.7
-0.6
1.9
49.63
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010233
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010676
45252373 - 45274452
22080