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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45265484_45269263_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
45265484 - 45269263
Intron Length:
3780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTTATCAGA
5'SS Class:
weak_major
3'SS Sequence:
GAAGCTGATGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGTATTTGATC
Flanking Amino Acid:
MKFQMSTEILTREQALDYSE
Intron Amino Acid Position:
1013

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.2
56.6
42.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
47.7
-0.1
1.2
41.9
42.1
Minor 5ss
36.9
-1.5
2.7
42
38.6
Minor BPS
61
0.33
1.5
69.91
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010233
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010676
45252373 - 45274452
22080