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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45266666_45267731_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45266666 - 45267731
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
AATATTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTACATGTAAGT
Flanking Amino Acid:
AAEEEIADLQAENTSLSRKL
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
72.8
35.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
72.2
0.5
0.9
63.4
43
Minor 5ss
35.6
-1.6
3.5
49.9
40.8
Minor BPS
44.3
-0.3
2.3
67
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010233
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030586
45262945 - 45269995
7051