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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45269983_45271575_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45269983 - 45271575
Intron Length:
1593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GAATCATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGGTTTTGAATC
Flanking Amino Acid:
FSWMVRRHHCRMCGRIFCYY
Intron Amino Acid Position:
1111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1.2
78.8
38.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
65.6
0.35
1
55.6
44.3
Minor 5ss
39.2
-1.2
2.8
49.7
46.6
Minor BPS
57.3
0.21
1.4
63.1
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010233
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010676
45252373 - 45274452
22080