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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45272255_45274360_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45272255 - 45274360
Intron Length:
2106

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCGTGACAG
5'SS Class:
major
3'SS Sequence:
TCTTTGACAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CGTTCTTTGACA
Flanking Amino Acid:
SQMERDSLDQIHSRCTDHFP
Intron Amino Acid Position:
1214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.9
0.26
1.2
45
38.7
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
72
0.5
1
67.6
37.7
Minor 5ss
23.3
-3.1
3.8
29.6
37.1
Minor BPS
73
0.72
1.2
74.82
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010233
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010676
45252373 - 45274452
22080